Spot Detection Python Packages

big-fish

Toolbox for the analysis of smFISH images.

fishfeats

Napari plugin for spatial RNA quantification

deepcell-spots

Deep Learning Library for Spot Detection

deepblink

Threshold independent detection and localization of diffraction-limited spots.

big-fish-reloaded

Toolbox for the analysis of smFISH images.

fluospotter

Fluospotter is an end-to-end pipeline designed for nuclei segmentation and puncta detection in fluorescence microscopy images.