Splicing Python Packages

alphagenome-pytorch

Implementation of AlphaGenome, Deepmind's updated genomic attention model

pygtftk

A python package and a set of shell commands to handle GTF files

mmsplice

Tissue-specific variant effect predictions on splicing

spliceai-pytorch

Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.

splam

Splice junction scoring tool

regulas

Bioinformatics Tool for the Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data

splice-q

SPLICE-q is a fast and user-friendly Python tool for genome-wide SPLICing Efficiency quantification