Spike Trains Python Packages

bayesbin

Exact Bayesian binning of rates: piecewise-constant rates with error bars, change points and the evidence for every number of bins, summed over all segmentations (Endres, Oram, Schindelin & Földiák 2008). NumPy/SciPy, optional numba.

spykesim

Extended edit similarity measurement for high dimensional discrete-time series signal (e.g., multi-unit spike-train).

thorns

Spike analysis software

functional-connectivity

Sensing the functional connectivity of the brain

snn-reservoir-py

Spiking Neural Network (SNN) – Reservoir Model with spike-based feature extraction

synapticonn

A Python package for analyzing single-unit spike-sorted data to infer synaptic connections in neural circuits.

itng

IASBS Theoretical Neuroscience Group toolbox, to analysis the time series, spike trains and graphs in python.