Spike Sorting Python Packages

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

35K 783 260

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

6K 117 48

kilosort

Fast spike sorting with drift correction

6K 608 287

sortingview

Web app for viewing results of ephys spike sorting

6K 29 9

isosplit6

Isosplit clustering

2K 9 6

mountainsort5

MountainSort spike sorting algorithm, version 5

2K 60 18

dartsort

A modular spike sorter written in Python and PyTorch

2K 28 10

spikeinterface-gui

GUI for spikeinterface objects

1K 69 19

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

1K 20 20

catsort

A collision-aware with template matching spike sorter

679 2 0

hs-detection

Optimized spike detection based on https://github.com/mhhennig/HS2

529 0 5

neurocomputers

NeuroBridge API — 123 endpoints, 55+ analysis modules for brain organoid data. Organoid IQ, STDP, attractors, consciousness metrics, and more.

521 0 0

ml-ms4alg

MountainSort v4

512 8 19

zpe-neuro

ZPE-Neuro V0.0: DETERMINISTIC NEURAL SIGNAL CODEC: Extracellular Spikes | Neuropixels | DANDI-Anchored | IBL Validated | Spike Train Transport

503 1 0

isosplit5

Efficient clustering algorithm for unknown number of unimodal clusters

498 2 7

herdingspikes

Software for high density electrophysiology

350 31 18

spikely

Spike sorting made simple

252 15 7

shybrid

a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

183 11 2

yass-algorithm

YASS: Yet Another Spike Sorter

158 69 15

synapticonn

A Python package for analyzing single-unit spike-sorted data to infer synaptic connections in neural circuits.

140 2 0

spike-cluster-score

Spike Cluster Score (SCS) is a clustering performance metric designed with the purpose of spike sorting in mind

87 0 0