Spike Sorting Python Packages

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

36K 858 286

sortingview

Web app for viewing results of ephys spike sorting

5K 29 9

kilosort

Fast spike sorting with drift correction

5K 631 296

dartsort

A modular spike sorter written in Python and PyTorch

4K 29 16

isosplit6

Isosplit clustering

2K 11 7

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

2K 117 47

mountainsort5

MountainSort spike sorting algorithm, version 5

2K 64 19

spikeinterface-gui

GUI for spikeinterface objects

979 72 23

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

710 20 19

herdingspikes

Software for high density electrophysiology

519 31 19

isosplit5

Efficient clustering algorithm for unknown number of unimodal clusters

458 2 7

catsort

A collision-aware with template matching spike sorter

436 2 0

shybrid

a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

336 11 2

vanillasort

VanillaSort

316 3 0

segovia

A fast, memory-bounded Rust engine for electrophysiology signal processing — Neuropixels-scale, callable from Python.

248 1 0

ml-ms4alg

MountainSort v4

201 8 20

spikely

A GUI for running popular spike sorting algorithms on extracellular data of any file format.

154 15 6

parus-major

Fully automated real-time spike analysis system

110 0 0

synapticonn

A Python package for analyzing single-unit spike-sorted data to infer synaptic connections in neural circuits.

102 2 0

yass-algorithm

YASS: Yet Another Spike Sorter

81 71 14

neurocomputers

NeuroBridge API — 123 endpoints, 55+ analysis modules for brain organoid data. Organoid IQ, STDP, attractors, consciousness metrics, and more.

73 2 0

zpe-neuro

ZPE-Neuro V0.0: DETERMINISTIC NEURAL SIGNAL CODEC: Extracellular Spikes | Neuropixels | DANDI-Anchored | IBL Validated | Spike Train Transport

62 1 0

hs-detection

Optimized spike detection based on https://github.com/mhhennig/HS2

52 0 5

spike-cluster-score

Spike Cluster Score (SCS) is a clustering performance metric designed with the purpose of spike sorting in mind.

43 0 0