Spike Sorting Python Packages

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

41K 811 264

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

9K 117 48

kilosort

Fast spike sorting with drift correction

7K 622 290

sortingview

Web app for viewing results of ephys spike sorting

3K 29 9

segovia

A fast, memory-bounded Rust engine for electrophysiology signal processing — Neuropixels-scale, callable from Python.

3K 0 0

dartsort

A modular spike sorter written in Python and PyTorch

2K 27 11

mountainsort5

MountainSort spike sorting algorithm, version 5

2K 60 19

isosplit6

Isosplit clustering

2K 9 6

spikeinterface-gui

GUI for spikeinterface objects

1K 70 21

catsort

A collision-aware with template matching spike sorter

722 2 0

isosplit5

Efficient clustering algorithm for unknown number of unimodal clusters

709 2 7

spikesorters

Python wrappers for popular spike sorters

627 20 20

shybrid

A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

488 11 2

herdingspikes

Software for high density electrophysiology

469 32 18

ml-ms4alg

Mountainsort v4 for MountainLab

461 8 20

hs-detection

Optimized spike detection based on https://github.com/mhhennig/HS2

411 0 5

neurocomputers

Analysis engine for brain organoid data — 57 modules, from spike sorting to Organoid IQ

219 0 0

spikely

Spike sorting made simple

210 15 7

yass-algorithm

YASS: Yet Another Spike Sorter

180 70 14

zpe-neuro

Deterministic spike-event extraction codec for electrophysiology signals; Python; Gate C/D PASS on bounded DANDI 000034

172 1 0

synapticonn

A Python package for analyzing single-unit spike-sorted data to infer synaptic connections in neural circuits.

169 2 0

spike-cluster-score

Spike Cluster Score (SCS) is a clustering performance metric designed with the purpose of spike sorting in mind

108 0 0