PyRank

Spatialdata Python Packages

Python packages with the GitHub topic spatialdata. Sorted by relevance, with stars and monthly downloads.
prism-oncology
sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

5K 277 50
M4i-Imaging-Mass-Spectrometry
thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into SpatialData/Zarr format - your portal to spatial omics

2K 20 1
saeyslab
harpy-analysis

Single-cell spatial omics analysis that makes you happy!

1K 62 7
iamtekson
geotile

GeoTile is the python library for tiling the geographic raster data (eg. Tiff etc)

654 92 12
quentinblampey
spatialdata-xenium-explorer

Interoperability between SpatialData and the Xenium Explorer

296 26 0
metaspace2020
metaspace-converter

Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData

240 16 1