PyRank

Spatial Proteomics Python Packages

Python packages with the GitHub topic spatial-proteomics. Sorted by relevance, with stars and monthly downloads.
ShaokunAn
spatialquery

Spatial query tools for analyzing spatial transcriptomics data

1K 9 1
nadeemlab
spatialprofilingtoolbox

Toolbox for spatial analysis of single cell data.

880 23 2
CraigMyles
raw2features

OME-Zarr whole-slide images to patch- and slide-level foundation-model embeddings - cloud-native, FAIR, model- and backend-agnostic.

425 1 1
complextissue
spatiomic

A Python package for unsupervised analysis of spatial (prote)omics data.

391 17 0
nadeemlab
smprofiler

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

147 23 2