PyRank

Spatial Proteomics Python Packages

Python packages with the GitHub topic spatial-proteomics. Sorted by monthly downloads, with stars and forks.
ShaokunAn
spatialquery

Efficient tool to query spatial pattern of spatial-modalities data

818 9 1
nadeemlab
spatialprofilingtoolbox

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io) [NeurIPS'26]

589 23 2
complextissue
spatiomic

A Python package for unsupervised analysis of spatial (prote)omics data.

353 19 0
CraigMyles
raw2features

OME-Zarr whole-slide images to patch- and slide-level foundation-model embeddings - cloud-native, FAIR, model- and backend-agnostic.

152 4 2
nadeemlab
smprofiler

Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io) [NeurIPS'26]

70 23 2