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Spatial Omic Python Packages

Python packages with the GitHub topic spatial-omic. Sorted by relevance, with stars and monthly downloads.
mathisbouvet
spatial-cluster-compare

Automated benchmarking and selection of clustering algorithms (KMeans, Agglomerative, Spectral, GMM, DBSCAN) for spatial/multiplex immunofluorescence data, using Hopkins statistic, PCA, multi-metric evaluation (Silhouette, Davies-Bouldin, Calinski-Harabasz, ARI stability) and automatic best-method selection.

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