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Spatial Domains Python Packages

Python packages with the GitHub topic spatial-domains. Sorted by relevance, with stars and monthly downloads.
cafferychen777
chatspatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

3K 37 9
jianhuupenn
spagcn

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

3K 261 67
prism-oncology
novae

Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.

2K 130 13
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