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Spatial Domains Python Packages

Python packages with the GitHub topic spatial-domains. Sorted by monthly downloads, with stars and forks.
jianhuupenn
spagcn

SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network

10K 265 66
cafferychen777
chatspatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

3K 44 14
prism-oncology
novae

Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.

2K 162 15
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