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Snps Python Packages

Python packages with the GitHub topic snps. Sorted by relevance, with stars and monthly downloads.
apriha
snps

tools for reading, writing, generating, merging, and remapping SNPs

10K 116 18
btmartin721
snpio

SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses.

4K 2 1
apriha
lineage

tools for analyzing and exploring genetic relationships

2K 175 28
Gregor-Mendel-Institute
snpmatch

A simple python library to identify the most likely strain given the SNPs for a sample

901 10 5
cslarsen
arv

A fast 23andMe DNA parser and inferrer for Python

560 123 7
omatheuspimenta
gramep

GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle

457 7 2
mkpython3
mutation-simulator

A tool for simulating random mutations in any genome

352 43 6
USDA-VS
vsnpdev

vSNP -- validate SNPs

294 23 12
muneebdev7
snpraefentia

SNP Prioritization in metagenomic variants

64 1 0
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