Snps Python Packages

snps

tools for reading, writing, generating, merging, and remapping SNPs

snpio

SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses.

lineage

tools for analyzing and exploring genetic relationships

snpmatch

A simple python library to identify the most likely strain given the SNPs for a sample

arv

A fast 23andMe DNA parser and inferrer for Python

gramep

GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle

mutation-simulator

A tool for simulating random mutations in any genome

vsnpdev

vSNP -- validate SNPs

snpraefentia

SNP Prioritization in metagenomic variants