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Snakemake Workflow Python Packages

Python packages with the GitHub topic snakemake-workflow. Sorted by relevance, with stars and monthly downloads.
4dn-dcic
tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

10K 72 28
suqingdong
fastmitoassembler

Fast Assembler Workflow for MitoGenome

254 1 1
josephdong1000
neurodent

Pipeline to analyze and generate figures from rodent EEGs

200 4 0
mjmlab
pyinseq

Python pipeline for analyzing INSeq Insertion Sequencing data

193 8 6
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