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Snakemake Workflow Python Packages

Python packages with the GitHub topic snakemake-workflow. Sorted by monthly downloads, with stars and forks.
4dn-dcic
tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

4K 73 29
josephdong1000
neurodent

Pipeline to analyze and generate figures from rodent EEGs

604 9 0
suqingdong
fastmitoassembler

Fast Assembler Workflow for MitoGenome

134 1 1
mjmlab
pyinseq

Python pipeline for analyzing INSeq Insertion Sequencing data

124 8 6
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology