Smith Waterman Python Packages

pyopal

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

minineedle

Needleman-Wunsch and Smith-Waterman algorithms in python

goombay

Python implementation of several sequence alignment algorithms such as Waterman-Smith-Beyer, Gotoh, and Needleman-Wunsch intended to calculate distance, show alignment, and display the underlying matrices.

pairwise-sequence-alignment

Global and local pairwise alignments between nucleotide/protein sequences.

gasal2-py

GASAL2-Py — Python bindings for GASAL2 (CUDA GPU sequence alignment). Search: GASAL2 python, GASAL2-Py.