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Skeletonization Python Packages

Python packages with the GitHub topic skeletonization. Sorted by relevance, with stars and monthly downloads.
navis-org
skeletor

Extraction of 3D skeletons from meshes.

26K 256 29
seung-lab
dijkstra3d

Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

22K 86 14
seung-lab
kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

15K 202 29
seung-lab
igneous-pipeline

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

2K 67 24
phcerdan
sgext

Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completely in-silico. Used at least in biopolymers simulations and vascular networks.

2K 6 1
domattioli
chilmesh

Mesh data structure for representing triangular, quadrangular, and mixed-element meshes. Intended for hydrodynamic domains.

2K 1 1
domattioli
madmeshr

Placeholder for the in-development RL-based 2D quad mesh generator (advancing-front + Pan et al.'s SAC). See GitHub for status; no functional code published yet.

474 1 0
meyerls
pc-skeletor

Point Cloud Skeletonizer

218 224 26
jb-sharp
medialaxis3d

Module to perform 3D skeletonization using Medial Axis Transform

157 0 0
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