Skeletonization Python Packages

kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

dijkstra3d

Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

skeletor

Extraction of 3D skeletons from meshes.

igneous-pipeline

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

sgext

Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completely in-silico. Used at least in biopolymers simulations and vascular networks.

chilmesh

Mesh data structure for representing triangular, quadrangular, and mixed-element meshes. Intended for hydrodynamic domains.

brook-cu12

TEASAR skeletonization of 3D label volumes on NVIDIA GPUs

stentfit

Semi-Automated Virtual Stent Implantation with Mixed-Dimensional Modelling

pc-skeletor

Skeletonization of 3D Point Clouds

medialaxis3d

Python implementation of 3D Medial Axis Transform for skeletonization.