Skeletonization Python Packages

skeletor

Extraction of 3D skeletons from meshes.

dijkstra3d

Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes

kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

igneous-pipeline

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

sgext

Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completely in-silico. Used at least in biopolymers simulations and vascular networks.

chilmesh

Mesh data structure for representing triangular, quadrangular, and mixed-element meshes. Intended for hydrodynamic domains.

madmeshr

Placeholder for the in-development RL-based 2D quad mesh generator (advancing-front + Pan et al.'s SAC). See GitHub for status; no functional code published yet.

pc-skeletor

Point Cloud Skeletonizer

medialaxis3d

Module to perform 3D skeletonization using Medial Axis Transform