Singularity Python Packages

spython

streamlined singularity python client (spython) for singularity

hpccm

HPC Container Maker

scitex-container

Unified container management for Apptainer and Docker — part of the SciTeX ecosystem

plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake, Bolz, et al. (2025), https://doi.org/10.1093/nar/gkaf361

expfactory

software to generate a reproducible container with a battery of experiments

clowdr

Tool for launching pipelines locally and remotely

singularity-hpc

Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.

composite-resolve

Exact limit computation for Python functions. Resolve singularities algebraically.

brainseg-containers

A container based wrapper for brain segmentation tools

pycompss

COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.

popper

Container-native task automation engine.

singularity-compose

orchestration for singularity containers (under development)

connectomemapper

Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping

jh-hpc-interface

JupyterHub + High-Performance Computing

lxm3

LXM3: XManager launch backend for HPC clusters

sshlab

A tool for launching Jupyter Notebooks on remote servers using SSH

cftw

ctfw (containers for the win) is a base python module for competitive containers

gpucrate

Creates hard-linked GPU driver (currently just NVIDIA) volumes for use with docker, singularity, etc.

repo2singularity

Repo2singularity: Wrapper around repo2docker producing producing Jupyter enabled Singularity images.

singularity-tunel

command line tool for general HPC functions using Singularity containers