Singularity Python Packages

spython

streamlined singularity python client (spython) for singularity

hpccm

HPC Container Maker

scitex-container

Unified container management for Apptainer and Docker

scitex-agent-container

Declarative YAML framework to define, run & orchestrate AI coding agents

plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake, Bolz, et al. (2025), https://doi.org/10.1093/nar/gkaf361

expfactory

software to generate a reproducible container with a battery of experiments

singularity-hpc

Local registry intended for HPC using containers and system modules.

clowdr

Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives

composite-resolve

Evaluate Python functions at points where they're undefined.

pycompss

Python Binding for COMP Superscalar Runtime

popper

Container-native task automation engine.

brainseg-containers

A container based wrapper for brain segmentation tools

connectomemapper

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

jh-hpc-interface

JupyterHub + High-Performace Computing

singularity-compose

simple orchestration for singularity containers

lxm3

LXM3: XManager launch backend for HPC clusters

sshlab

Jupyter notebook / lab through ssh with a single command and config file

cftw

containers for the win is a module for container competitions

gpucrate

gpucrate creates hard-linked GPU driver volumes for use with docker, singularity, etc.

repo2singularity

Repo2apptainer: Wrapper around repo2docker producing Jupyter enabled Apptainer/Singularity images.

singularity-tunel

commander and viewer to tunnel commands for HPC