Single Cell Atac Seq Python Packages

circe-py

Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

piaso-tools

PIASO: Precise Integrative Analysis of Single-cell Omics

emergene

Individual cell-based differential transcriptomic analysis across conditions

cosg

Accurate and fast cell marker gene identification with COSG

scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.