PyRank

Single Cell Atac Seq Python Packages

Python packages with the GitHub topic single-cell-atac-seq. Sorted by relevance, with stars and monthly downloads.
cantinilab
circe-py

Circe: Package for building co-accessibility networks from ATAC-seq data.

2K 35 2
parashardhapola
scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

2K 116 15
genecell
piaso-tools

Precise Integrative Analysis of Single-cell Omics.

697 6 2
genecell
cosg

Accurate and fast cell marker gene identification with COSG

563 59 7
genecell
emergene

EMERGENE for individual cell-based differential transcriptomic analysis across conditions.

421 4 0
parashardhapola
scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

6 116 15