Short Tandem Repeats Python Packages

strprofiler

A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.

stranger

Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

nanorepeat

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

strvcf-annotator

Tool that adds STR (Short Tandem Repeat) information to VCF files.

str-mut-signatures

Extract STR signatures from annotated VCF