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Short Tandem Repeats Python Packages

Python packages with the GitHub topic short-tandem-repeats. Sorted by relevance, with stars and monthly downloads.
Clinical-Genomics
stranger

Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

2K 41 7
WGLab
nanorepeat

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

699 19 4
j-andrews7
strprofiler

A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.

317 4 1
acg-team
strvcf-annotator

Tool that adds STR (Short Tandem Repeat) information to VCF files.

221 0 0
acg-team
str-mut-signatures

Extract STR signatures from annotated VCF

213 0 0
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