Sge Python Packages

pysqa

Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.

longbow

Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.

mycluster

Utilities to support interacting with multiple HPC clusters

runjob

No description available

qstat

parse Grid Engine qstat job info list into a list of python dicts

htseqcountcluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

libbatch

Generic batch management library

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

datasnakes

This package helps in the analysis of orthologous genes.

scisweeper

scisweeper - scientific parameter sweeper

qtop

qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & related clusters. It supports **SLURM, PBS, SGE & OAR** families. It is the evolution of the historic shell version of the tool, born out of CERN's LHC project needs:

qsubwt

Simple wrapper for qsub which provides the functionality of the '-sync' option