Sge Python Packages

pysqa

Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.

longbow

Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.

runjob

runjob is a program for managing a group of related jobs running on a compute cluster

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

mycluster

Utilities to support interacting with multiple HPC clusters

htseqcountcluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

libbatch

Generic batch management library

qstat

parse Grid Engine qstat job info list into a list of python dicts

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

qtop

qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & related clusters. It supports **SLURM, PBS, SGE & OAR** families. It is the evolution of the historic shell version of the tool, born out of CERN's LHC project needs:

qsubwt

Simple wrapper for qsub which provides the functionality of the '-sync' option

scisweeper

scisweeper - scientific parameter sweeper, with easy debugging capabilities and an interface for most scientific queuing systems.