Sge Python Packages

pysqa

Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.

longbow

Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.

mycluster

Utilities to support interacting with multiple HPC clusters

runjob

runjob is a program for managing a group of related jobs running on a compute cluster

htseqcountcluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

qstat

parse Grid Engine qstat job info list into a list of python dicts

libbatch

Generic batch management library

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

qtop

qtop: the fast text mode way to monitor your cluster's utilization and status; the time has come to take back control of your cluster's scheduling business

scisweeper

scisweeper - scientific parameter sweeper, with easy debugging capabilities and an interface for most scientific queuing systems.

qsubwt

Simple wrapper for qsub which provides the functionality of the '-sync' option