PyRank

Seurat Python Packages

Python packages with the GitHub topic seurat. Sorted by monthly downloads, with stars and forks.
lilab-bcb
cirrocumulus

Bring your single-cell data to life

3K 102 19
becavin-lab
checkatlas

One liner tool to check the quality of your single-cell atlases.

2K 7 3
ElliotXie
autozyme

Autonomous multi-agent framework to optimize scientific software

2K 51 4
cafferychen777
mllmcelltype

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

619 661 59
kenflab
llm-sc-curator

Data-centric marker distillation for zero-shot cell-type and spatial annotation with LLMs.

602 3 0
GenomicAI
truecell

Pure-Python port of Seurat (v5) — single-cell RNA-seq and spatial transcriptomics analysis (Xenium/Visium/CosMx), built on NumPy/SciPy/AnnData.

515 10 4
GenomicAI
shanuz

Pure-Python port of Seurat (v5) — single-cell RNA-seq and spatial transcriptomics analysis (Xenium/Visium/CosMx), built on NumPy/SciPy/AnnData.

121 10 4
KalinNonchev
azimuthpy

Python wrapper for Azimuth single-cell reference mapping: annotate cell types from AnnData using rpy2

111 2 0
ethanfenton
scagg

Pseudobulk and metacell aggregation for single-cell RNA-seq (AnnData/scanpy + Seurat/R)

86 0 0