Seurat Python Packages

cirrocumulus

Bring your single-cell data to life

checkatlas

One liner tool to check the quality of your single-cell atlases.

mllmcelltype

A Python module for cell type annotation using various LLMs.

llm-sc-curator

Data-centric marker distillation for zero-shot cell-type and spatial annotation with LLMs.

scagg

Pseudobulk and metacell aggregation for single-cell RNA-seq (AnnData/scanpy + Seurat/R)

azimuthpy

Python wrapper for Azimuth (Seurat-based single-cell mapping) using rpy2