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Seurat Python Packages

Python packages with the GitHub topic seurat. Sorted by relevance, with stars and monthly downloads.
lilab-bcb
cirrocumulus

Bring your single-cell data to life

5K 97 17
becavin-lab
checkatlas

One liner tool to check the quality of your single-cell atlases.

2K 3 2
cafferychen777
mllmcelltype

A Python module for cell type annotation using various LLMs.

1K 641 55
kenflab
llm-sc-curator

Data-centric marker distillation for zero-shot cell-type and spatial annotation with LLMs.

403 3 0
ethanfenton
scagg

Pseudobulk and metacell aggregation for single-cell RNA-seq (AnnData/scanpy + Seurat/R)

366 0 0
KalinNonchev
azimuthpy

Python wrapper for Azimuth (Seurat-based single-cell mapping) using rpy2

182 1 0
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