Sequence Python Packages

pygrinder

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

splicecraft

In-Terminal Plasmid Design Workbench

sequenzo

A fast, scalable, and intuitive Python package in sequence analysis.

mdiff

Package for finding difference between two input sequences with ability to detect sequence elements displacements.

django-generate-series

Use Postgres' generate_series to create sequences with Django's ORM

pypynum

PyPyNum is a versatile Python math lib. It features modules for math, data analysis, arrays, crypto, physics, RNG, data proc, stats, eq solving, image proc, interp, matrix calc, and high-prec math. Designed for scientific computing, data science, and ML, it offers efficient, general-purpose tools.

orange3-timeseries

🍊 :chart_with_upwards_trend: Orange add-on for analyzing, visualizing, manipulating, and forecasting time series data.

seqlike

Unified biological sequence manipulation in Python

cstag

Python library tailored for for manipulating and visualizing minimap2's cs tags

numpypy

PyPyNum is a versatile Python math lib. It features modules for math, data analysis, arrays, crypto, physics, RNG, data proc, stats, eq solving, image proc, interp, matrix calc, and high-prec math. Designed for scientific computing, data science, and ML, it offers efficient, general-purpose tools.

bioconvert

convert between bioinformatics formats

quicked

Python bindings for QuickEd

streq

🧬 Python utilities for working with nucleotide sequence strings.

mutalyzer-algebra

A Boolean Algebra for Genetic Variants

bluewhale3-timeseries

用于探索时间序列和顺序数据的蓝鲸插件。

smof

Explore and analyze biological sequence data

camina

Your Python project companion

ring-seq-py

A Pythonic class for sequences considered circular

perf-ssr

PERF is an exhaustive repeat finder

a-pandas-ex-sequence-search

Sequence / string search with NumPy in pandas DataFrames

hmm-classifier

No description available

pycorruptor

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

secuenciaalfanumerica

Librería de python para convertir de número a un grupo secuencial distinto AA, AB, ...