Sequence Classification Python Packages

intronic

Retrieve annotated intron sequences from an annotated genome and classify them as minor (U12-type) or major (U2-type) using a support vector machine model.

mobiorigin

MobiOrigin classifies bacterial contigs as plasmid, chromosome, phage, or unclassified using sequence, coding and mobility-marker evidence.

sequentia

Scikit-Learn compatible HMM and DTW based sequence machine learning algorithms in Python.

transformers-keras

Transformer-based models implemented in tensorflow 2.x(using keras).

genai4seqcls

Generative AI fine-tune and inference for sequence classification tasks

smile-datasets

Data pipelines for both TensorFlow and PyTorch!

rapidnlp-datasets

Data pipelines for both TensorFlow and PyTorch!

fastsk

Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.io/en/master/

naivenlp-datasets

Data pipelines for both TensorFlow and PyTorch!

stablednam

StableDNAm: stable and efficient DNA methylation prediction with adaptive feature correction learning (BMC Genomics, 2023)