Sed Ml Python Packages

biosimulators-utils

Utilities for building standardized command-line interfaces for biosimulation software packages

5K 4 6

biomodels

Python library to download and cache models from BioModels

2K 2 0

biosimulators-test-suite

Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators

2K 7 2

kisao

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

2K 12 0

biosimulators-copasi

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

1K 2 3

biosimulations-modeldb

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

1K 0 0

biosimulators-tellurium

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

920 2 2

biosimulators-amici

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

901 3 1

biosimulators-pysces

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

857 2 0

biosimulators-gillespy2

GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

846 2 1

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

735 2 0

biosimulators-boolnet

BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

724 0 0

biosimulators-bionetgen

BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

696 1 2

biosimulators-pyneuroml

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

591 1 0

biosimulators-cbmpy

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

578 0 0

biosimulators-masspy

MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

541 1 0

biosimulators-xpp

XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

491 0 1

biosimulators-opencor

OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container

485 0 1

biosimulators-ginsim

GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

422 0 0

biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

310 1 0

biosimulators-rbapy

RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

306 0 0