Scientific Python Packages

ert

ERT - Ensemble based Reservoir Tool - is designed for running ensembles of dynamical models such as reservoir models, in order to do sensitivity analysis and data assimilation. ERT supports data assimilation using the Ensemble Smoother (ES) and Ensemble Smoother with Multiple Data Assimilation (ES-MDA).

magpylib

Python package for computation of magnetic fields of magnets, currents and moments.

allensdk

code for reading and processing Allen Institute for Brain Science data

scirs2

SciRS2 - Scientific Computing and AI in Rust., providing SciPy-compatible APIs while leveraging Rust's performance, safety, and concurrency features. Unlike traditional scientific libraries

aris-lib

A mathematical computing library

xrayutilities

xrayutilities - a package with useful scripts for X-ray diffraction physicists

pandastable

Table analysis in Tkinter using pandas DataFrames.

quickgraphlib

A scientific graphing library for QtQuick

cellxgene

An interactive explorer for single-cell transcriptomics data

codemetapy

Generate and manage CodeMeta software metadata

hardwarelibrary

A simple application-oriented and device-oriented library with a variety of communication ports for controlling devices (POSIX serial, USB, etc...)

openaaas-mcp-adapter

OpenAaaS: science agent network — bring AI to your data, not your data to AI. AaaS, Agent as a Service, MCP protocol, local execution, Docker sandbox, zero-config Rust nodes.

csdmpy

The Core Scientific Dataset Model (CSDM): A versatile and light-weight file-format for scientific datasets.

autolab

Python package for laboratory instruments control and scientific experiments automation

crikit2

Hyperspectral imaging (HSI) processing and analysis platform (user interface, UI)

eprpy

EPRPy is a python library to streamline routine analysis of Electron Paramagnetic Resonance data.

circuitpython-uplot

Small framework to create graphics in CircuitPython

unittestersg

UnitTesterSG is for unit testing scientific/engineering outputs. It accommodates nested and even staggered array type structures, and mixed data types (like strings and integers etc). It also enables you to set numerical and absolute tolerances.

cellxgene-gateway

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

magpylib-material-response

Python package extending the Magpylib library by providing magnetic field analysis for soft materials and demagnetization of hard magnets.

anomalytics

The ultimate anomaly detection library.

pyopenaaas

OpenAaaS: science agent network — bring AI to your data, not your data to AI. AaaS, Agent as a Service, MCP protocol, local execution, Docker sandbox, zero-config Rust nodes.

biskit

A Python platform for Structural Bioinformatics

googlescholarreport

Bibliographic capture system for non-scrapping data sources