Scientific Software Python Packages

chemvas

A chemical drawing app with AI-assisted editing

fathon

python package for DFA (Detrended Fluctuation Analysis) and related algorithms

pymovements

A python package for processing eye movement data

spectrl

Self-contained, URL-safe mass spectrum interchange for Python and TypeScript

treillis

A Python scientific library to generate 2D and 3D lattices and modelize their behavior

smudgy

Python package for Point Cloud smoothing and interpolation with C++ and OpenMP backend.

pynamo-egt

Python code for plotting evolutionary game phase portraits and analyzing replicator dynamics

osa-tool

Tool that just makes your open source project better using LLM agents

mpl2nc

Command-line tool for converting Sigma Space Micro Pulse Lidar (MPL) data to NetCDF

aquarius-time

Scientific time library for Python

websemantic

Language models prepare scientific simulations without guessing: one descriptor per code gives a contract, an ontology with SHACL shapes, a validator and FAIR metadata; the original codes stay pinned and unchanged (TLS, LQL-Equiv, pyrcel).

liftassess

Python tool for assessing genomic coordinate liftOver results using exact alignment geometry, UCSC comparative evidence, reverse liftOver and flanking-context checks, and provenance-aware interpretation.

dicomqc

Audit DICOM metadata for privacy risks.

scikit-fem-native

scikit-fem-native: native high-performance finite-element assembly backend for scikit-fem-style workflows. Distributed as scikit-fem-native, imported as skfemntv.

gimie

Extract linked metadata from repositories

cl2nc

Command-line tool for converting ceilometer data files to NetCDF, supporting Vaisala CL51, CL31, and CT25K

scix-exoplanet-search

Reproducible Kepler transit detection, machine-learning vetting, and independent validation; no confirmed discoveries.

pytvfemd

Python implementation of time varying filter EMD

annnet

AnnNet (Annotated Network) is a unified, high-expressivity graph platform designed to bring the convenience of AnnData-style annotated containers to networks, multilayer structures, and hypergraphs.

convert-emd

A tool for exporting data from EMD (Velox) files

de-stress-lab

Selection-aware scientific stress tests, frozen prediction ledgers, and a DESI DR2 reproducibility flagship

gwas-tools

adaptive scattering recognizer tool for gravitational waves detector characterization

mrr2c

Command-line tool for converting Metek MRR-2 micro rain radar data to NetCDF

frheed

A program for real-time Reflection High Energy Electron Diffraction (RHEED) analysis.