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Scientific Research Python Packages

Python packages with the GitHub topic scientific-research. Sorted by relevance, with stars and monthly downloads.
marcomusy
vedo

A python module for scientific analysis of 3D data based on VTK and Numpy

33K 2K 277
anzalks
synaptipy

A software for electrophysiology data visualisation and analysis. Multi file format support and plugin based analysis modules for user needs.

7K 5 0
alan-turing-institute
scivision

scivision: a framework for scientific image analysis

2K 108 40
rybakov-ks
particleanalyzer

SEM Image Analysis Tool

2K 18 4
AdityaSavara
unittestersg

UnitTesterSG is for unit testing scientific/engineering outputs. It accommodates nested and even staggered array type structures, and mixed data types (like strings and integers etc). It also enables you to set numerical and absolute tolerances.

2K 2 0
ONEMULE
scibudy

Codex-native scientific research expansion assistant with scholarly search, library management, and local semantic analysis

1K 1 0
hummat
paperpipe

Unified paper database for coding agents + PaperQA2

1K 9 1
elias-jhsph
scienceai-llm

An open-source agentic harness for scientific literature analysis. Coordinates frontier models to extract data, replicate findings, and perform systematic reviews with full provenance tracking.

1K 7 0
ywatanabe1989
scitex-skills

Auto-generated AI agent skill pages for the SciTeX ecosystem

713 0 0
dianna-ai
dianna

Deep Insight And Neural Network Analysis

657 55 12
tkoyama010
pyvista-js

PyVista-like API for vtk.js

633 6 1
Technion-Kishony-lab
data-to-paper

data-to-paper: Backward-traceable AI-driven scientific research

573 793 92
Just-Curieous
curie-ai

❓Curie: Automated and Rigorous Scientific Experimentation with AI Agents

556 357 29
zimoliao
scholaraio

Scholar All-In-One: A research infrastructure for AI agents

479 464 66
daniloceano
lorenzcycletoolkit

Program for computing the Lorenz Energy Cycle (LEC) in a closed region of the atmosphere.

472 9 4
vishk23
arbiter-debate

Open-source framework for formally verifying academic paper claims using multi-agent LLM debate + Z3/Knuckledragger proof certificates. Supports OpenAI, Anthropic, Google, Grok.

313 0 0
LoonanChauvette
video-vocal-rt

Minimal package to record vocal response to video stimuli. Useful for vocal reaction time research using video stimuli instead of pictures.

277 0 0
JonasRackl
labmate-mcp

Your AI lab companion — 78 MCP tools for literature, compounds, synthesis, benchwork, peptides & publication writing

264 1 0
valayDave
arxiv-miner

ArXiv-Miner: Mine/Scrape Arxiv-Papers To Structured Datasets

223 141 9
adamspierer
freeclimber

FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay

220 15 7
digital-organology
hmsm

Tools for image based MIDI generation from historical music storage media

156 0 0
mkhoshbin1
vcams

Voxel-Based Computer-Aided Modeling Software for Complex Structures

126 1 0
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