Scientific Research Python Packages

vedo

A python module for scientific analysis of 3D data based on VTK and Numpy

synaptipy

A software for electrophysiology data visualisation and analysis. Multi file format support and plugin based analysis modules for user needs.

scivision

scivision: a framework for scientific image analysis

particleanalyzer

SEM Image Analysis Tool

unittestersg

UnitTesterSG is for unit testing scientific/engineering outputs. It accommodates nested and even staggered array type structures, and mixed data types (like strings and integers etc). It also enables you to set numerical and absolute tolerances.

scibudy

Codex-native scientific research expansion assistant with scholarly search, library management, and local semantic analysis

paperpipe

Unified paper database for coding agents + PaperQA2

scienceai-llm

An open-source agentic harness for scientific literature analysis. Coordinates frontier models to extract data, replicate findings, and perform systematic reviews with full provenance tracking.

scitex-skills

Auto-generated AI agent skill pages for the SciTeX ecosystem

dianna

Deep Insight And Neural Network Analysis

pyvista-js

PyVista-like API for vtk.js

data-to-paper

data-to-paper: Backward-traceable AI-driven scientific research

curie-ai

❓Curie: Automated and Rigorous Scientific Experimentation with AI Agents

scholaraio

Scholar All-In-One: A research infrastructure for AI agents

lorenzcycletoolkit

Program for computing the Lorenz Energy Cycle (LEC) in a closed region of the atmosphere.

arbiter-debate

Open-source framework for formally verifying academic paper claims using multi-agent LLM debate + Z3/Knuckledragger proof certificates. Supports OpenAI, Anthropic, Google, Grok.

video-vocal-rt

Minimal package to record vocal response to video stimuli. Useful for vocal reaction time research using video stimuli instead of pictures.

labmate-mcp

Your AI lab companion — 78 MCP tools for literature, compounds, synthesis, benchwork, peptides & publication writing

arxiv-miner

ArXiv-Miner: Mine/Scrape Arxiv-Papers To Structured Datasets

freeclimber

FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay

hmsm

Tools for image based MIDI generation from historical music storage media

vcams

Voxel-Based Computer-Aided Modeling Software for Complex Structures