Scientific Research Python Packages

vedo

A python module for scientific analysis of 3D data based on VTK and Numpy

pyvista-js

PyVista-like API for vtk.js

quantized-lab

Scientific toolbox for common thin film characterization -- X-ray scattering, magnetometry, SIMS, etc. Handle OriginPro projects

find-research-papers-mcp

MCP server for scientific grounding: search arXiv, OpenAlex, Crossref, Semantic Scholar, PubMed — references/citations from paywalled journals via public metadata

paperpipe

Extract equations and context from research papers for LLM coding assistants (arXiv, LaTeX, RAG)

treillis

A Python scientific library to generate 2D and 3D lattices and modelize their behavior

particleanalyzer

A Computer Vision-Based Tool for Automatic Segmentation and Size Analysis of Nanoparticles in Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) Images

data-to-paper

data-to-paper: Backward-traceable AI-driven scientific research

unittestersg

UnitTesterSG is for unit testing scientific/engineering outputs. It accommodates nested and even staggered array type structures, and mixed data types (like strings and integers etc). It also enables you to set numerical and absolute tolerances. Compatible with pytest.

whybook

A question-driven view of Jupyter notebooks, as a JupyterLab extension

dianna

Deep Insight And Neural Network Analysis

paperci

Continuous integration for scientific stories: traceable evidence, claim linting, and model-agnostic story design.

defendable-science

The scientist's research-workflow plugin for Claude Code — from hypothesis to thesis. Research you can defend.

lorenzcycletoolkit

Program for computing the Lorenz Energy Cycle (LEC) in a closed region of the atmosphere.

scienceai-llm

An open-source agentic harness for scientific literature analysis. Coordinates frontier models to extract data, replicate findings, and perform systematic reviews with full provenance tracking.

synaptipy

A software for electrophysiology data visualisation and analysis. Multi file format support and plugin based analysis modules for user needs.

labmate-mcp

Your AI lab companion — 78 MCP tools for literature, compounds, synthesis, benchwork, peptides & publication writing

exovista

improved exodus output for PyVista

scivision

scivision: a framework for scientific image analysis

curie-ai

❓Curie: Automated and Rigorous Scientific Experimentation with AI Agents

scholaraio

Scholar All-In-One: A research infrastructure for AI agents

scibudy

Codex-native scientific research expansion assistant with scholarly search, library management, and local semantic analysis

honest-scholar

The scientist's research-workflow plugin for Claude Code — from hypothesis to thesis. Research you can defend.

experiment-audit

Scientific Research Reasoning Engine for analyzing experimental evidence, evaluating scientific claims, and generating structured research reports.