Scientific Research Python Packages

vedo

A python module for scientific analysis of 3D data based on VTK and Numpy

paperpipe

Extract equations and context from research papers for LLM coding assistants (arXiv, LaTeX, RAG)

exovista

improved exodus output for PyVista

dianna

Deep Insight And Neural Network Analysis

particleanalyzer

A Computer Vision-Based Tool for Automatic Segmentation and Size Analysis of Nanoparticles in Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) Images

pyvista-js

PyVista-like API for vtk.js

synaptipy

A software for electrophysiology data visualisation and analysis. Multi file format support and plugin based analysis modules for user needs.

scienceai-llm

An open-source agentic harness for scientific literature analysis. Coordinates frontier models to extract data, replicate findings, and perform systematic reviews with full provenance tracking.

scivision

scivision: a framework for scientific image analysis

lorenzcycletoolkit

Program for computing the Lorenz Energy Cycle (LEC) in a closed region of the atmosphere.

unittestersg

UnitTesterSG is for unit testing scientific/engineering outputs. It accommodates nested and even staggered array type structures, and mixed data types (like strings and integers etc). It also enables you to set numerical and absolute tolerances. Compatible with pytest.

labmate-mcp

Your AI lab companion — 78 MCP tools for literature, compounds, synthesis, benchwork, peptides & publication writing

curie-ai

A package for scientific research experimentation agent

data-to-paper

data-to-paper: Backward-traceable AI-driven scientific research

scholaraio

Scholar All-In-One — A research infrastructure for AI agents

scibudy

Codex-native scientific research expansion assistant with scholarly search, library management, and local semantic analysis

video-vocal-rt

Minimal package to record vocal response to video stimuli. Useful for vocal reaction time research using video stimuli instead of pictures.

arbiter-debate

Formally verified multi-agent debates

arxiv-miner

arxiv_miner is a toolkit for mining research papers on CS ArXiv.

freeclimber

FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay

vcams

A Program and Python Library for Voxel-Based Computer-Aided Modeling of Complex Structures

hmsm

Tools for image based digitization of historical music storage media

scitex-skills

Auto-generated AI agent skill pages for the SciTeX ecosystem