Scientific Python Python Packages

cyrk

Runge-Kutta ODE Integrator Implemented in Cython and Numba

scientific-computing-system-2-0

Scientific computing platform on NumPy/SciPy/pandas/matplotlib: linear algebra, stats, optimization, signals, ML, information theory, chaos, Bayes, metaheuristics, geometry and RL.

cpdatakit

Schema-first Python toolkit for validating, normalizing, inspecting, and visualizing scientific and engineering datasets.

rosettax

Interactive flow cytometry calibration software for fluorescence and scattering workflows, with FCS loading, peak finding, fitting, profiles, and reusable calibration exports.

gpbiometricspy

Scientific Python infrastructure for Gazepoint EDA/SCR, PPG/HRV, pupil, gaze, AOI, QC and multimodal psychophysiology.

openmodalpy

A unified Python workflow for POD, MPOD, DMD, SPOD, PSD-POD, BSMD, and ST-POD on spatiotemporal data

qs-dmss

QS-DMSS Studio: evidence-first simulation lab for reproducible runs, evidence bundles, campaign comparison, and research-object exports.

gp3sequencespy

Transparent, reproducible sequence analysis in Python. Audit ordered categorical data, discover recurring structure, compare trajectories, model transitions and latent states, test group differences, and report every analytical choice.

zenreg

ZenReg is a Python-based high-throughput, memory-efficient pipeline for N-dimensional image registration, designed for large microscopy and imaging datasets.

heatrapy

Python library for simulating heat transfer processes

nistchempy

Unofficial Python tools for querying NIST Chemistry WebBook pages and extracting molecular-property records.

ilthermopy

Unofficial Python client for ILThermo 2.0 with SMILES-enriched ionic-liquid data for cheminformatics, thermodynamics, and ML workflows.

sccircuits

Numerical superconducting-circuit analysis in Python.

operandomerge

Synchronize heterogeneous experimental instrument data onto one auditable timeline.

reactorcheck

Unit-aware reaction metrics and QC for catalytic reactor and GC data.

tpxlab

Reproducible analysis and global deconvolution of TPR, TPD and TPO data.

pyplotdesigner

Visual, constraint-based layout designer for Matplotlib figures.

npyquick

A quick GUI tool to preview 2D npy images and cross-section analysis.

amrl-transport

Hardware-agnostic interface for autonomous atom manipulation with STM. Simulator + RL-ready + distributed task queue.

echotime

EchoTime: explainable structural similarity for time series and time-series datasets, with shareable HTML reports and agent-ready JSON.

atomref-proatoms

Reproducible spherical proatomic radial electron-density datasets for atom-centered theoretical-chemistry and crystallographic models.

openauc

Open-source Python toolkit for ingesting, validating, plotting, generating and archiving analytical ultracentrifugation data.

relationalstats

A practical Python toolkit for applied and statistical social network analysis, with research-grade documentation and transparent methodological boundaries.