Scientific Data Python Packages

tensogram

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

scitex-dataset

Multi-domain scientific dataset fetcher — neuroscience, biology, pharmacology, medical. Part of SciTeX.

python-icat

Python interface to ICAT and IDS

tensogram-zarr

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

tensogram-xarray

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

tensogram-anemoi

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

hsds

Cloud-native, service based access to HDF data

pdbe-mmcif-validator

Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.

mmcif-gen

CLI tool for creating mmCIF files from various facility data sources

marimba

A Python framework for structuring, processing, packaging and distributing FAIR scientific image datasets

pyccmm

Python parser and metadata generator for Czech Core Metadata Model (CCMM).