Scientific Data Python Packages

tensogram

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

scitex-dataset

Multi-domain scientific dataset fetcher (neuroscience, biology, medical)

ifdo

A Python library for creating, validating and manipulating iFDO (image FAIR Digital Object) metadata files

hsds

Cloud-native, service based access to HDF data

data-reliability-index

Data Reliability Index is a Python package for attaching trust metadata to data, scoring reliability, and filtering records through explicit policies before they are used in analysis, APIs, or pipelines.

python-icat

Python interface to ICAT and IDS

marimba

A Python framework for structuring, processing, packaging and distributing FAIR scientific image datasets

tensogram-xarray

xarray backend engine for tensogram .tgm files

tensogram-zarr

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

tensogram-anemoi

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

mmcif-gen

This application is designed to create mmcif files from facilities data.

pdbe-mmcif-validator

Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.

pyccmm

Python implementation of CCMM (Czech Core Metadata Model) standard