Scientific Data Python Packages

usdata

Unified Python SDK and CLI for discovering, fetching, and tracking provenance of U.S. public scientific data

pdbe-mmcif-validator

Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.

tensogram

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

hsds

Cloud-native, service based access to HDF data

python-icat

Python interface to ICAT and IDS

scitex-dataset

Multi-domain scientific dataset fetcher (neuroscience, biology, medical)

data-reliability-index

Data Reliability Index is a Python package for attaching trust metadata to data, scoring reliability, and filtering records through explicit policies before they are used in analysis, APIs, or pipelines.

mmcif-gen

This application is designed to create mmcif files from facilities data.

ifdo

A Python library for creating, validating and manipulating iFDO (image FAIR Digital Object) metadata files

tensogram-xarray

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

tensogram-zarr

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

marimba

A Python framework for structuring, processing, packaging and distributing FAIR scientific image datasets

ordifile

Convert supported chromatography results into one auditable Excel workbook.

tensogram-anemoi

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

operandomerge

Synchronize heterogeneous experimental instrument data onto one auditable timeline.

tpxlab

Reproducible analysis and global deconvolution of TPR, TPD and TPO data.

pyccmm

Python parser and metadata generator for Czech Core Metadata Model (CCMM).