sbml-model
COBRApy is a package for constraint-based modeling of metabolic networks.
Spatial bio-chemical reaction model editor and simulator
Extracts EFMs from result file of mplrs and decompresses EFMs from efmtool and mplrs results that have been compressed with EFMlrs
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems
Optimization tool based on ODE discretisation.
