sbml-model
COBRApy is a package for constraint-based modeling of metabolic networks.
Spatial bio-chemical reaction model editor and simulator
Python package and workflow for EFM calculation via (mp)lrs and efmtool
pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems
A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.
