PyRank
  • Insights
  • PyPI
  • GitHub
  • Search
  • Compare
  • Advisories
  • Ecosystem
  • About

Samtools Python Packages

Python packages with the GitHub topic samtools. Sorted by relevance, with stars and monthly downloads.
mdshw5
pyfaidx

Efficient pythonic random access to fasta subsequences

480K 486 76
etkayapar
bamrefine

A small program to mask positions that could result in a PMD artifact from a BAM file using a predefined SNP catalog

734 4 1
robaina
filtersam

('Tools to filter sam o bam files by percent identity or percent of matched sequence',)

411 6 0
erinyoung
amplicon-coverage-inspector

Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.

408 3 0
dasprosad
yafax

Yet Another FASTA Index and Extraction Tool

63 0 0
tiagofilipe12
plasmiduncover

Script to obtain plasmid id from WGS data using bowtie2 to map

61 1 1
innovate-invent
bampy

Python implementation of htslib supporting BAM, SAM, and BGZF compression

59 1 0
    • Data from PyPI, GitHub, ClickHouse, and BigQuery