Salmon Python Packages

raptor-rnaseq

RNA-seq Analysis Pipeline Testing and Optimization Resource

shapeshifter

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

expressionable

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

expressionable-cli

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

novartis-pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

shapeshifter-cli

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

pycax-client

Python client for CAX

dgeontology

Jupyter notebooks for DGE results and ontology analysis and visualisation.