Salmon Python Packages

isoform-dominance

Is this functional isoform-class comparison measurable by short reads? Group-level identifiability, quantification and testing from bulk RNA-seq

raptor-rnaseq

RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.

shapeshifter

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

novartis-pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

shapeshifter-cli

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

expressionable

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

expressionable-cli

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

pycax-client

Python client for the CAX API. Holmes, E. E and M. Williams. 2023. pycax: a Python client for the Coordinated Assessments data exchange REST API

dgeontology

Jupyter notebooks for DGE results and ontology analysis and visualisation.