Salmon Python Packages

isoform-dominance

Config-driven, CI-tested pipeline for isoform-usage quantification from bulk RNA-seq (Salmon + paired statistics).

raptor-rnaseq

RNA-seq Analysis Pipeline Testing and Optimization Resource

novartis-pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

shapeshifter

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

expressionable

Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.

expressionable-cli

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

shapeshifter-cli

Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.

pycax-client

Python client for the CAX API. Holmes, E. E and M. Williams. 2023. pycax: a Python client for the Coordinated Assessments data exchange REST API

dgeontology

Library for gene set enrichment analysis (ontology analysis) and visualisation