Rpy2 Python Packages

anndata2ri

Convert between AnnData and SingleCellExperiment

rpy2-arrow

Share Apache Arrow datasets between Python and R.

pychattr

Python Channel Attribution (pychattr) - A Python implementation of the excellent R ChannelAttribution library

rpy-bridge

Python-R interoperability layer for environment management, type-safe conversions, data normalization, safe function execution, and supporting recursive R object unpacking.

mclustpy

Clustering using the mclust algorithm.

azimuthpy

Python wrapper for Azimuth (Seurat-based single-cell mapping) using rpy2

pyllmr

A library for spec-based, validated R execution from Python via a bridge (rpy2), with optional LLM planning and CLI commands.

profile-binr

PROFILE RNA-seq binarization technique.

rpy2-r6

rpy2 extension package to faciliate handling of R6 objects

pyreqtl

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.