Rnaseq Python Packages

helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

biomedical-ai-skills

AI agent skills for cancer biology and multi-omics research

rnalysis

Analyze your RNA sequencing data without writing a single line of code

ore

Associate outliers with rare variation

globalsearch

Code repository for the Coral Global Search project.

pm4ngs

Project Manager for NGS data analysis

eastr

Emending Alignment of Spliced Transcript Reads

xpressplot

A toolkit for navigating and analyzing gene expression datasets

htseqcountcluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

celligner

tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.

bulkdgd

Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.

novartis-pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

xpresstools

A toolkit for navigating and analyzing gene expression datasets

runas

RNA-seq pipeline

pydeconv

Python implementation of bulk RNAseq deconvolution algorithms

metasheet-guard

Experimental-design-aware QC, repair, and workflow export for sequencing analysis sample sheets.

tmerge

Build highly accurate transcripts from long-read RNA data