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Rnaseq Python Packages

Python packages with the GitHub topic rnaseq. Sorted by relevance, with stars and monthly downloads.
helicalAI
helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

6K 214 37
GuyTeichman
rnalysis

RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize, explore, analyze, and share your data.

3K 141 13
bnediction
bonesistools

Python package providing bioinformatics tools for upstream and downstream analysis of the BoNesis framework

2K 3 0
frichter
ore

Associate outliers with rare variation

646 2 0
baliga-lab
globalsearch

globalsearch is a collection of Python modules and command tools for the Global Search pipeline.

625 1 2
ncbi
pm4ngs

Project Manager for NGS data analysis

505 31 10
XPRESSyourself
xpressplot

A toolkit for navigating and analyzing gene expression datasets

432 3 1
datasnakes
htseqcountcluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

401 4 0
ishinder
eastr

Emending Alignment of Spliced Transcript Reads

394 12 1
BroadInstitute
celligner

A useful module for alligning cell lines to tumors

296 11 9
XPRESSyourself
xpresstools

A toolkit for navigating and analyzing gene expression datasets

221 3 1
villegar
runas

RNA-seq pipeline

217 0 0
Novartis
novartis-pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

177 30 3
jacobwindsor
tmerge

Build highly accurate transcripts from long-read RNA data

116 1 0
owkin
pydeconv

Python implementation of bulk RNAseq deconvolution algorithms

90 45 0
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