Rna Velocity Python Packages

cellrank

CellRank: dynamics from multi-view single-cell data

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

scatrans

A Python package for mechanism-aware single-cell differential analysis. It partitions DE genes into transcription-driven versus stabilization-driven classes using nascent (unspliced) RNA residuals. Also supports conventional DE, functional enrichment (ORA, GSEA, GO, KEGG), and visualization.

scvelo-rs

Drop-in Rust + PyO3 acceleration of scvelo for single-cell RNA velocity

celldancer

Predict RNA velocity through deep learning

dynast-release

Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments

cytopath

Simulation based inference of differentiation trajectories from RNA velocity fields.

velodyn

Dynamical systems methods for RNA velocity analysis