Rna Seq Analysis Python Packages

hide-deconv

Hierarchical cell-type deconvolution and analysis of bulk RNA-seq data using single-cell references | Python package and CLI

rnalysis

Analyze your RNA sequencing data without writing a single line of code

scarches

Reference mapping for single-cell genomics

eastr

Emending Alignment of Spliced Transcript Reads

polyase

A package for analyzing allele-specific expression in polyploid organisms

roma-analysis

Representation and Quantification Of Module Activity in Single Cells

celldb

celldb - Database for functional genomics

scroma

Batch-aware SVD-based pathway-activity inference for single-cell transcriptomics

bulkdgd

Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.

ciara-python

Implementation of entropy of mixing algorithm in python

single-cell-portal

Tutorials, workflows, and convenience scripts for Single Cell Portal

profile-binr

PROFILE RNA-seq binarization technique.

pyreqtl

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.