Retina Python Packages

retinawhitenoise

Code for regenerating the random-number-based contrast values used for white-noise stimulation in the Gollisch Lab. Used for both temporal and spatiotemporal stimuli.

aerzip

Useful tools to compress and decompress AEDAT files in Python

retinal-thin-vessels

A Python package for computing the recall and precision scores specifically on thin vessels in retinal images and generating weight masks for BCE Loss to enhance models perfomance on segmenting these fine structures, as detailed in the paper "Vessel-Width-Based Metrics and Weight Masks for Retinal Blood Vessel Segmentation".

openretina

Collaborative retina modelling across datasets and species.

heyexreader

Python package to read Heidelberg Spectralis files

mlscorecheck

Testing the consistency of binary classification performance scores reported in papers

stnmf

A fast and versatile implementation of spike-triggered non-negative matrix factorization (STNMF) based on accelerated/fast HALS algorithms