Research Tools Python Packages

figrecipe

Reproducible matplotlib wrapper with mm-precision layouts

zotero-mcp-server

Zotero MCP: Connects your Zotero research library with Claude and other AI assistants via the Model Context Protocol to discuss papers, get summaries, analyze citations, and more.

gnosislab

A scientific-method runtime for AI agents: hypotheses, experiments, evidence, provenance, reproducibility, and auditable conclusions.

paperbanana

Open source implementation and extension of Google Research’s PaperBanana for automated academic figures, diagrams, and research visuals, expanded to new domains like slide generation.

hyperresearch

Convert Claude Code or Codex into the most intelligent Deep Research Agent. Collect, search, and synthesize web research into a persistent, searchable wiki that builds on itself. Hosted API + MCP: hyperresearch.ai

qsvt-pennylane

Python toolkit for Quantum Singular Value Transformation (QSVT), including polynomial constructions, matrix function workflows, and reproducible tools for research in quantum algorithms and numerical linear algebra.

sci-etl-core

Async-first, domain-agnostic Python toolkit for mining scientific literature: LLM-powered ETL pipelines with pluggable extractors, parsers, exporters, and resumable state.

magi-research

Agent-native research workspace. A deterministic CLI that ingests arXiv / PDF / LaTeX / Zotero papers into an Obsidian-compatible knowledge graph, with local hybrid search (BM25 + vectors), claim-level provenance, and a nightly literature radar.

overleaf-comments-export

Export Overleaf comments and tracked changes to Markdown + JSON, optimized for AI-agent consumption

citevahti

Run unit tests on your manuscript. Check every manuscript claim against its cited evidence. Human-first, AI-second, Zotero-audited, local-first.

universal-research-mcp

Read-only MCP for provenance-first research memory, evidence re-verification, and governed Codex workflows.

vqe-pennylane

Python toolkit for Variational Quantum Eigensolver (VQE), QPE, and QITE workflows for quantum chemistry simulations using PennyLane, supporting reproducible hybrid quantum–classical experiments, using PennyLane.

mpltweak

像在 PPT 里调多图排版一样调 matplotlib，然后把参数写回你的代码。

citesight

Analyzes student assignments to extract citations and references, then verifies their authenticity against academic databases to detect potential academic integrity issues.

bibexpy

BibexPy is a Python-based software designed to streamline bibliometric data integration, deduplication, metadata enrichment, and format conversion. It simplifies the preparation of high-quality datasets for advanced analyses by automating traditionally manual and error-prone tasks.

bibverify

Cross-platform BibTeX verification for researchers and AI assistants — CLI, Python API, MCP server, and explainable multi-source matching.

scholar-mcp

MCP server aggregating academic search sources into one unified interface for research agents

urmcp

Read-only MCP for provenance-first research memory, evidence re-verification, and governed Codex workflows.

cli-anything-zotero

CLI server for Zotero 7/8/9 — let AI manage your library. 70+ CLI commands for search, import, PDF, BibTeX, notes, and more. Works with Claude, Cursor, ChatGPT.

zotkit

Let AI agents manage your Zotero library: headless CLI + Python API to search, import, enrich, export BibTeX, and attach PDFs (Web API + WebDAV) — no desktop app required. Ships with an agent skill & AGENTS.md.

mtgwiki

A lightweight Python toolkit for turning MediaWiki content into structured, reusable data

falsiflow

Stop unverifiable AI eval, product metric, and R&D claims from passing CI.

data-reliability-index

Data Reliability Index is a Python package for attaching trust metadata to data, scoring reliability, and filtering records through explicit policies before they are used in analysis, APIs, or pipelines.

web-forager

A search-and-fetch toolkit for AI agents, available as an MCP server and as standalone Agent Skills