Research Software Python Packages

datajoint

Relational Workflows: where database schemas define executable data pipelines.

howfairis

Command line tool to analyze a GitHub or GitLab repository's compliance with the fair-software.eu recommendations

pii-codex

A research python package for detecting, categorizing, and assessing the severity of personal identifiable information (PII)

datazimmer

Data artifact orchestrator

critiplot

Visualize risk-of-bias in systematic reviews and meta-analyses

heatrapy

Python library for simulating heat transfer processes

simpa

The Simulation and Image Processing for Photonics and Acoustics (SIMPA) toolkit.

iga

IGA is the InvenioRDM GitHub Archiver, a standalone program as well as a GitHub Action that lets you automatically archive GitHub software releases in an InvenioRDM repository.

echotime

EchoTime: explainable structural similarity for time series and time-series datasets, with shareable HTML reports and agent-ready JSON.

rse

tools for assessment and categorization of research software

hera-matlab

HERA: Hierarchical-Compensatory, Effect-Size Driven Ranking Algorithm.

pyfunctionhood

Local computation of immediate neighbours of a given monotone non-degenerate Boolean function

inverse-projections

Python package for inverse projection methods with a scikit-learn-style API.

seismic-linter

Automated temporal causality linter for seismic ML pipelines. Catch data leakage before it ruins your earthquake forecasting model.

codontrace

CodonTrace Genesis — deterministic research software for digital evolution, causal mechanism auditing, replayable ALife experiments, and evidence-gated AI/evolution studies.