Rare Variant Analysis Python Packages

seqlinkage

Collapsed Haplotype Pattern Method for Linkage Analysis of Next-Generation Sequencing Data

gnomad-db

Scalable SQLite database for fast querying of gnomAD variant annotations (allele frequency, depth, population metrics). Supports gnomAD v2-v4, WGS and WES.

pyrarecomb

Pythonic version of RareComb