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Quality Control Python Packages

Python packages with the GitHub topic quality-control. Sorted by relevance, with stars and monthly downloads.
MultiQC
multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

69K 1K 667
Toloka
crowd-kit

Control the quality of your labeled data with the Python tools you already know.

15K 245 21
nipreps
nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

15K 11 24
rhpvorderman
sequali

Sequali is a QC tool that generates useful graphs for both short and long-read data.

6K 33 1
Julie-Fabre
bombcell

Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.

3K 230 58
sdomanskyi
digitalcellsorter

Toolkit for analysis and identification of cell types from heterogeneous single cell RNA-seq data

3K 24 10
nipreps
mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain.

3K 359 138
raamana
visualqc

Assistive tool for the quality control of neuroimaging data

3K 76 14
DeepKnowledge1
anomavision

Optimized PaDim based on Anodet

2K 31 8
metno
titanlib

Automatic data quality control software library

2K 40 12
thomasjkeel
rainfallqc

Quality control for rainfall data

2K 0 0
yegor256
aibolit

Aibolit: Static Analyzer with Machine Learning in Mind

2K 98 38
ronin-gw
pymasc

Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

1K 2 0
MHKiT-Software
mhkit

Marine and Hydrokinetic Toolkit

1K 56 50
broundal
pytolemaic

Package for ML model analysis

1K 10 3
Open-Minds-Lab
mrdataset

MRdataset : unified interface to various neuroimaging dataset formats

1K 2 4
metagenopolis
crocodeel

CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data

957 28 0
MannLabs
alphaviz

A interactive Dashboard to explore mass spectrometry data.

943 39 5
jimlehner
process-improvement

A Python library for performing calculations and generating figures that facilitate an understanding of process variation.

833 3 1
demml
potato-head

🥔 Quality control for your potato heads (LLMs)

787 1 0
phenomecentre
npyc

The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.

694 25 9
biosimulations
biomodels-qc

Utility functions to assist biomodels curation.

655 0 0
khan5v
kalibra

Statistical regression detection and CI quality gates for AI agents

631 1 0
martibosch
meteora

Pythonic interface to access data from meteorological stations

574 1 0
    • Data from PyPI, GitHub, ClickHouse, and BigQuery