Quality Control Python Packages

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

crowd-kit

Control the quality of your labeled data with the Python tools you already know.

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

sequali

Sequali is a QC tool that generates useful graphs for both short and long-read data.

bombcell

Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.

digitalcellsorter

Toolkit for analysis and identification of cell types from heterogeneous single cell RNA-seq data

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain.

visualqc

Assistive tool for the quality control of neuroimaging data

anomavision

Optimized PaDim based on Anodet

titanlib

Automatic data quality control software library

rainfallqc

Quality control for rainfall data

aibolit

Aibolit: Static Analyzer with Machine Learning in Mind

pymasc

Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

mhkit

Marine and Hydrokinetic Toolkit

pytolemaic

Package for ML model analysis

mrdataset

MRdataset : unified interface to various neuroimaging dataset formats

crocodeel

CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data

alphaviz

A interactive Dashboard to explore mass spectrometry data.

process-improvement

A Python library for performing calculations and generating figures that facilitate an understanding of process variation.

potato-head

🥔 Quality control for your potato heads (LLMs)

npyc

The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.

biomodels-qc

Utility functions to assist biomodels curation.

kalibra

Statistical regression detection and CI quality gates for AI agents

meteora

Pythonic interface to access data from meteorological stations