Quality Control Python Packages

complexipy

Blazingly fast cognitive complexity analysis for Python, written in Rust.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

crowd-kit

Control the quality of your labeled data with the Python tools you already know.

hydroserverpy

Open-source platform for ingesting, managing, and sharing hydrological time series data

sequali

Fast sequencing data quality metrics

bombcell

Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.

gradlint

Fast gradient-scheme QC, b-vector flip detection, and repair for diffusion MRI and tractography pipelines.

checkqc

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

titanlib

Automatic data quality control software library

daspi

Process Analytics & Six Sigma in Python — integrated workflows for capability analysis, root cause analysis, and statistical process control.

digitalcellsorter

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

processbehavior

Process behavior charts (control charts / SPC) for Python — XmR, Xbar-S, histograms, capability, Taguchi loss. Implements Bishop's Variance Analysis System with chart math validated against published reference results.

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

rainfallqc

Quality control methods for rainfall data, based on polars

pymasc

Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

pytolemaic

Toolbox for analysis of model's quality and model's description. For further details see

aibolit

A Static Analyzer for Java Powered by Machine Learning: Identifies Anti-Patterns Begging for Refactoring

visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

pixel-patrol

Scientific Dataset Quality Control and Data Exploration Tool

the-real-genotools

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

mhkit

MHKiT-Python provides the marine renewable energy (MRE) community tools for data processing, visualization, quality control, resource assessment, and device performance.

pixel-patrol-base

Scientific Dataset Quality Control and Data Exploration Tool

potato-head

🥔 Quality control for your potato heads (LLMs)