Quality Control Python Packages

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

crowd-kit

Control the quality of your labeled data with the Python tools you already know.

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

gradlint

Fast gradient-scheme QC, b-vector flip detection, and repair for diffusion MRI and tractography pipelines.

hydroserverpy

Open-source platform for ingesting, managing, and sharing hydrological time series data

sequali

Fast sequencing data quality metrics

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

bombcell

Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.

rainfallqc

Quality control methods for rainfall data, based on polars

pymasc

Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

digitalcellsorter

Toolkit for analysis and identification of cell types from heterogeneous single cell RNA-seq data

mhkit

MHKiT-Python provides the marine renewable energy (MRE) community tools for data processing, visualization, quality control, resource assessment, and device performance.

anomavision

Optimized PaDim based on Anodet

pixel-patrol-image

Scientific Dataset Quality Control and Data Exploration Tool

karyon

Legible, deterministic QC/qualification for bio-AI tool outputs — named-reason contracts + agent skills that compose with NVIDIA BioNeMo.

pixel-patrol-base

Scientific Dataset Quality Control and Data Exploration Tool

meteora

Pythonic interface to access data from meteorological stations :sunny: :umbrella: :cloud: :snowflake:

aibolit

A Static Analyzer for Java Powered by Machine Learning: Identifies Anti-Patterns Begging for Refactoring

titanlib

Automatic data quality control software library

pixel-patrol

Scientific Dataset Quality Control and Data Exploration Tool

visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

pixel-patrol-loader-bio

Scientific Dataset Quality Control and Data Exploration Tool

pixel-patrol-aqqua

Scientific Dataset Quality Control and Data Exploration Tool

shewhart

The statistical process control library for Python: control charts, capability analysis, and measurement systems analysis, validated against published reference values.