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Python Tools Packages

Python packages with the GitHub topic python-tools. Sorted by relevance, with stars and monthly downloads.
biobakery
metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

4K 414 93
biobakery
phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

3K 169 36
frkndncr
webanalyzer-security

WebAnalyzer is a versatile tool for comprehensive domain analysis. It provides insights into WHOIS data, DNS records, subdomains, SEO, web technologies, and security. Designed for developers and cybersecurity enthusiasts, it offers detailed reports and modular features for in-depth website audits.

2K 21 3
biobakery
halla

HAllA: Hierarchical All-against All Association Testing

2K 21 2
perf-pip
pepip

Shared global environment package installer using symlinks — like pnpm for Python

583 7 2
mateofumis
dumpdork

A powerful command-line tool for Google dorking, enabling users to uncover hidden information and vulnerabilities with advanced search queries.

569 37 6
huaiyu-yang
pyre-tools

通过加载脚本或项目地址,快速导出依赖文件,支持txt和toml格式

460 1 0
zbowling
depwise

A fast, comprehensive dependency analyzer for Python that detects unused, missing, and optional dependencies.

397 2 0
agusmakmun
changewords

Simply python tool to change or replace the text string in the files. This tool pretty nice for programmers if somehow they want to replace/change their codes for many files, eg: function, class, variable, etc for recursive files or not.

359 2 0
VAZlabs
cyber-find

Advanced OSINT tool for searching users across 200+ platforms

356 60 13
Matricess
depcycle

DepCycle is a CLI tool for visualizing Python project dependencies. Quickly generate clear module maps to identify, track, and eliminate circular dependencies and complex architectural coupling.

308 17 0
eriknyquist
duckargs

Code generation tool, creates python / C programs that parse command line arguments. Say goodbye to starting each project by reading "argparse" / "geptopt.h" docs.

301 123 4
biobakery
metawibele

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

295 23 3
lykhvar
ppcli

Dynamic CLI tool to manage project-specific commands using pyproject.toml configuration

290 0 0
Ailln
torbjorn

Provide some practical Python decorators.

263 8 0
biobakery
fugassem

FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes

248 21 2
diyarbagis
flasknetworkbackup

A free open-source Flask app for backup on switches,routers and firewalls.

226 3 0
biobakery
parathaa

PARATHAA: Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assignments for Amplicons.

195 3 2
biobakery
baqlava

Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy

183 16 2
RicoVZ
socks5man

SOCKS5 server management tool and library

170 12 7
rotsl
envguard-tool

macOS-first Python environment orchestration framework — preflight validation, dependency resolution, lock files, and safe managed execution.

152 0 0
biobakery
graphlan

GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.

151 110 30
codeswhite
probat

Battery life saver and reminder

138 0 0
thoth2357
poetryize

💻 Poetryize: A Typer-based CLI tool that converts requirements.txt to pyproject.toml, streamlining Python dependency management with Poetry. Enhances project maintainability through modern tooling integration.

138 17 3
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