Python Tools Packages

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

halla

HAllA: Hierarchical All-against All Association Testing

phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

changewords

Simply python tool to change or replace the text string in the files. This tool pretty nice for programmers if somehow they want to replace/change their codes for many files, eg: function, class, variable, etc for recursive files or not.

setuptools-scmx

setuptools-scm plugin for customized releases

pepip

🚀 Fast, space-efficient package manager for Python

depwise

A fast, comprehensive dependency analyzer for Python that detects unused, missing, and optional dependencies.

ppcli

Dynamic CLI tool to manage project-specific commands using pyproject.toml configuration

metawibele

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

pyre-tools

通过加载脚本或项目地址，快速导出依赖文件，支持txt和toml格式

torbjorn

🔨提供一些实用的 Python 装饰器

depcycle

DepCycle is a CLI tool for visualizing Python project dependencies. Quickly generate clear module maps to identify, track, and eliminate circular dependencies and complex architectural coupling.

duckargs

Code generation tool, creates python / C programs that parse command line arguments. Say bye to starting each project by reading "argparse" / "geptopt.h" docs.

parathaa

Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assignments for Amplicons (Parathaa)

fugassem

FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes

socks5man

Socks5man is a Socks5 management tool and Python library

poetryize

💻 Poetryize: A Typer-based CLI tool that converts requirements.txt to pyproject.toml, streamlining Python dependency management with Poetry. Enhances project maintainability through modern tooling integration.

flasknetworkbackup

A free open-source Flask app for backup on switches,routers and firewalls.

graphlan

High-quality circular representations of taxonomic and phylogenetic trees

pyunstuck

A powerful diagnostic tool for analyzing unresponsive Python programs, focusing on deadlocks and blocking issues.

baqlava

Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy

probat

Battery life saver and reminder

envguard-tool

macOS-first Python environment orchestration: preflight validation, dependency resolution, lock files, and safe managed execution. Catches broken envs before they break your code.

pymtools

Miscellaneous tools to speed up and improve your code.