pysb
High-performance sensitivity analysis for large ordinary differential equation models
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
Parameter estimation and model calibration using Genetic Algorithm optimization in Python.
PySB add-on providing utilities to add units to models and perform dimensional analysis.
