Pubmed Central Python Packages

biomcp-python

BioMCP: Biomedical Model Context Protocol

biomcp-cli

BioMCP: Biomedical Model Context Protocol

pubmed-parser

:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

nalaf

NLP framework in python for entity recognition and relationship extraction

pmcgrab

A PMC ID in. Clean, loss-aware article JSON out. Parse PubMed Central and JATS XML for biomedical AI, RAG, search, and literature pipelines.

easy-entrez

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

iflow-mcp-biomcp-python

BioMCP: Biomedical Model Context Protocol

iflow-mcp-genomoncology-biomcp

BioMCP: Biomedical Model Context Protocol

pubrunner

A framework for keeping biomedical text mining result up-to-date

scrapemed

ScrapeMed: Data scraping for PubMed Central.

biblio-glutton-harvester

Open Access PDF harvester