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Pubmed Central Python Packages

Python packages with the GitHub topic pubmed-central. Sorted by relevance, with stars and monthly downloads.
genomoncology
biomcp-python

BioMCP: Biomedical Model Context Protocol

32K 508 102
titipata
pubmed-parser

:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

12K 731 179
genomoncology
biomcp-cli

BioMCP: Biomedical Model Context Protocol

4K 508 102
krassowski
easy-entrez

Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.

714 81 6
Rostlab
nalaf

Natural Language Framework, for NER and RE

573 115 24
danielfrees
scrapemed

Data Scraping for PubMed Central.

274 17 1
jakelever
pubrunner

A framework for keeping biomedical text mining result up-to-date

254 42 6
genomoncology
iflow-mcp-biomcp-python

BioMCP: Biomedical Model Context Protocol

175 508 102
kermitt2
biblio-glutton-harvester

No description available

159 42 5
genomoncology
iflow-mcp-genomoncology-biomcp

Biomedical Model Context Protocol Server

119 508 102
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