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Pubmed Central Python Packages

Python packages with the GitHub topic pubmed-central. Sorted by relevance, with stars and monthly downloads.
genomoncology
biomcp-python

BioMCP: Biomedical Model Context Protocol

28K 545 108
titipata
pubmed-parser

:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

8K 734 180
genomoncology
biomcp-cli

BioMCP: Biomedical Model Context Protocol

4K 545 108
rajdeepmondaldotcom
pmcgrab

A PMC ID in. Clean, loss-aware article JSON out. Parse PubMed Central and JATS XML for biomedical AI, RAG, search, and literature pipelines.

1K 24 1
krassowski
easy-entrez

Python REST API for Entrez E-Utilities: stateless, easy to use, reliable.

936 82 6
Rostlab
nalaf

NLP framework in python for entity recognition and relationship extraction

909 115 24
jakelever
pubrunner

A framework to rerun text mining tools on the latest publications

410 42 6
genomoncology
iflow-mcp-biomcp-python

BioMCP: Biomedical Model Context Protocol

226 545 108
danielfrees
scrapemed

ScrapeMed: Data scraping for PubMed Central.

214 17 1
kermitt2
biblio-glutton-harvester

No description available

177 42 5
genomoncology
iflow-mcp-genomoncology-biomcp

Biomedical Model Context Protocol Server

165 545 108
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