Proteomics Data Analysis Python Packages

sdrf-pipelines

SDRF official validator and converts SDRF to pipeline configuration files

spectrum-io

IO related functionalities for oktoberfest.

proffer

Fast and flexible tool for protein inference

fulcrum-ms

Extreme-scale search pipeline from Seer

alphapepttools

Search- and quantification-engine agnostic biological interpretation of proteomics data

seer-pas-sdk

SDK for Seer Proteograph® Analysis Suite (PAS)

xomics

Python framework for explainable omics analysis