PyRank

Proteins Python Packages

Python packages with the GitHub topic proteins. Sorted by relevance, with stars and monthly downloads.
Acellera
moleculekit

MoleculeKit: Your favorite molecule manipulation kit

36K 237 38
tlambert03
fpbase

Python wrapper for FPBase.org GraphQL API.

10K 5 0
williamgilpin
pypdb

A Python API for the RCSB Protein Data Bank (PDB)

5K 335 76
lucidrains
progen-transformer

Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax

3K 114 17
BIONF
greedyfas

FAS - Tool for Feature Architecture Similarity calculation

2K 6 1
haddocking
haddock3

Official repo of the modular BioExcel version of HADDOCK

2K 251 61
bradyajohnston
molecularnodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

1K 1K 124
bio2bel
bio2bel-kegg

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

1K 13 3
menicgiulia
cpiextract

CPIExtract is a software package to collect and harmonize small molecule and protein interactions with support for stereoisomer matching.

846 11 2
szczurek-lab
seqme

Metrics for evaluating biological sequence design

817 15 1
ArnaudBelcour
bigecyhmm

Predict enzymatic impact on biogeochemical cycles from proteomes.

807 5 0
sacdallago
biotrainer

Biological prediction models made simple.

693 51 14
raghavagps
afpropred

AfProPred: A tool to predict anti-freezing proteins

519 2 0
saezlab
omnipath-utils

Prior-knowledge processing utilities Python package, database and web API

502 0 0
tekpinar
correlationplus

A Python package to calculate, visualize and analyze correlations of proteins.

478 43 8
TurtleTools
geometricus

A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

463 41 11
kamerlinlab
kif

KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.

449 35 5
BioinfoMachineLearning
dips-plus

The Enhanced Database of Interacting Protein Structures for Interface Prediction

436 55 9
BioinfoMachineLearning
deepinteract

A geometric deep learning framework (Geometric Transformers) for predicting protein interface contacts. (ICLR 2022)

417 66 12
Synthyra
protify

Low code molecular property prediction

348 13 8
Old-Shatterhand
protviewer

A tool to view activity pattern in protein structures.

334 0 0
chao1224
geom3d

Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023

285 130 15
andrewdalpino
prothash

Fast protein sequence embeddings distilled from ESMC.

271 3 0
bio2bel
bio2bel-uniprot

A package for downloading, parsing, storing, and serializing UniProt

267 0 1