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Protein Structure Prediction Python Packages

Python packages with the GitHub topic protein-structure-prediction. Sorted by relevance, with stars and monthly downloads.
lucidrains
alphafold3-pytorch

Implementation of Alphafold 3 from Google Deepmind in Pytorch

29K 2K 223
amckenna41
protpy

Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.

19K 17 1
okkevaneck
prospr

Prospr is a universal toolbox for protein structure prediction within the HP-model. The Python package is based on a C++ core, which gives Prospr its high performance. The C++ core is made available as a separate zip file to facilitate high-performance computing applications. The package comes with many prediction algorithms and datasets to use.

7K 17 1
smaniches
uniprot-mcp-server

Model Context Protocol server for UniProt — Swiss-Prot and TrEMBL protein knowledgebase. 41 tools across 8 families with per-query SHA-256 provenance verification and offline replay.

3K 2 0
delveopers
biosaic

KMer level tokenizer for DNA & Proteins sequences

611 0 0
dohlee
igfold-pytorch

IgFold - Pytorch

357 2 1
dohlee
deepab-pytorch

Unofficial implementation of DeepAb in PyTorch.

240 3 0
psipred
dmpfold

Protein structure prediction with the DMPfold2 method

128 58 15
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