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Protein Protein Interaction Python Packages

Python packages with the GitHub topic protein-protein-interaction. Sorted by relevance, with stars and monthly downloads.
abhishektiwari
hbat

HBAT 2: A Python Package to analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures

31K 8 2
y1zhou
arpeggia

A library for analyzing protein-protein interactions in PDB and mmCIF files

3K 4 1
kexinhuang12345
deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

3K 1K 303
smaniches
uniprot-mcp-server

Model Context Protocol server for UniProt — Swiss-Prot and TrEMBL protein knowledgebase. 41 tools across 8 families with per-query SHA-256 provenance verification and offline replay.

3K 2 0
hclimente
spada

⚔️ Find splicing-led, functional changes of the proteome.

872 10 1
mlund
duello

No description available

720 1 1
dwhswenson
contact-map

Contact maps based on MDTraj

569 48 21
Synthyra
protify

Low code molecular property prediction

515 11 7
louadi
nease

NEASE: A network-based approach for the enrichment of alternative splicing events

385 15 2
sbl-sdsc
mmtfpyspark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

291 68 27
DeepRank
deeprank

This repository has been integrated in https://github.com/DeepRank/deeprank2

286 147 24
afowdar
mdinteractions

MDInteractions: A python package for the distance-based analysis of intra- and inter-protein interactions.

260 0 0
snehaiasri
acrcasppi-ml

Prediction of protein-protein interaction between anti-crispr protein (acr) and CRISPR-associated (cas) protein using machine learning algorithm

214 0 0
leonweber
pedl

Search the biomedical literature for protein interactions and protein associations

185 11 2
CSB-KUL
ymap

An automated method to map yeast variants to proteins modifications and functional regions

168 5 6
qwerty239qwe
ppi-net-builder

Protein-Protein Interaction (PPI) network construction and analysis in Python

160 0 1
Emad-COMBINE-lab
ppi-origami

Tools for protein-protein interaction datasets.

159 0 0
ylaboratory
splitpea

Splitpea Python package for building rewired protein-protein interaction networks from alternative splicing events

151 1 0
wasineer-dev
braid-mrf

Predict protein complexes from high-throughput data

101 2 0
FarSeer-NMR
farseernmr

A software suite for automatic treatment, analysis and plotting of large and multivariable datasets of bioNMR peaklists.

83 12 5
scastlara
ppaxe

Protein-Protein interactions extractor from PubMed articles

82 13 5
kuijjerlab
pyscorpion

Constructs cell-type-specific gene regulatory networks from single-cell RNA-sequencing data using the SCORPION algorithm, which aggregates cells into super-cells and applies PANDA to infer transcription factor-target regulatory relationships.

80 0 0
Emad-COMBINE-lab
intrepppid

Incorporating Triplet Error for Predicting PPIs using Deep Learning

80 0 0
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