Protein Protein Interaction Python Packages

hbat

HBAT 2: A Python Package to analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures

arpeggia

A library for analyzing protein-protein interactions in PDB and mmCIF files

deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

uniprot-mcp-server

Model Context Protocol server for UniProt — Swiss-Prot and TrEMBL protein knowledgebase. 41 tools across 8 families with per-query SHA-256 provenance verification and offline replay.

spada

⚔️ Find splicing-led, functional changes of the proteome.

duello

No description available

contact-map

Contact maps based on MDTraj

protify

Low code molecular property prediction

nease

NEASE: A network-based approach for the enrichment of alternative splicing events

mmtfpyspark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

deeprank

This repository has been integrated in https://github.com/DeepRank/deeprank2

mdinteractions

MDInteractions: A python package for the distance-based analysis of intra- and inter-protein interactions.

acrcasppi-ml

Prediction of protein-protein interaction between anti-crispr protein (acr) and CRISPR-associated (cas) protein using machine learning algorithm

pedl

Search the biomedical literature for protein interactions and protein associations

ymap

An automated method to map yeast variants to proteins modifications and functional regions

ppi-net-builder

Protein-Protein Interaction (PPI) network construction and analysis in Python

ppi-origami

Tools for protein-protein interaction datasets.

splitpea

Splitpea Python package for building rewired protein-protein interaction networks from alternative splicing events

braid-mrf

Predict protein complexes from high-throughput data

farseernmr

A software suite for automatic treatment, analysis and plotting of large and multivariable datasets of bioNMR peaklists.

ppaxe

Protein-Protein interactions extractor from PubMed articles

pyscorpion

Constructs cell-type-specific gene regulatory networks from single-cell RNA-sequencing data using the SCORPION algorithm, which aggregates cells into super-cells and applies PANDA to infer transcription factor-target regulatory relationships.

intrepppid

Incorporating Triplet Error for Predicting PPIs using Deep Learning