PyRank

Protein Language Model Python Packages

Python packages with the GitHub topic protein-language-model. Sorted by relevance, with stars and monthly downloads.
andrewdalpino
esmc-protein-function

An Evolutionary-scale Model (ESM) for protein function prediction from amino acid sequences using the Gene Ontology (GO).

1K 4 0
biocentral
biocentral-api

Programmatic access to the biocentral ecosystem.

968 2 0
Dipayan26
protembedder

Extract protein embeddings from FASTA files using ESM-2, ProtT5, and ProtBert models

869 0 0
dohlee
abyssal-pytorch

Abyssal - Pytorch

836 6 2
dohlee
antiberty-pytorch

An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.

823 26 5
dohlee
proteinbert-pytorch-reproduction

Implementation of ProteinBERT, a deep language model designed for proteins.

749 3 0
yutanagano
sceptr

Highly informative TCR representation model

303 16 3
isyslab-hust
protflash

ProtFlash: A lightweight protein language model

270 98 3
dohlee
deepab-pytorch

Unofficial implementation of DeepAb in PyTorch.

240 3 0
patrik-ackerman
antifp2

AntiFP2: A tool for prediction of Antifungal Proteins

208 0 0
mims-harvard
spectrae

SPECTRA: The spectral framework for model evaluation

151 43 6
LLNL
protlib-designer

Integer Linear Programming for Protein Library Design

136 9 2