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Protein Embeddings Python Packages

Python packages with the GitHub topic protein-embeddings. Sorted by monthly downloads, with stars and forks.
tsenoner
protspace

Explore protein language model embeddings in your browser — surface relationships sequence similarity misses, overlay annotations, and transfer labels (EAT). Nothing uploaded.

5K 17 4
tsenoner
protlabel

Explore protein language model embeddings in your browser — surface relationships sequence similarity misses, overlay annotations, and transfer labels (EAT). Nothing uploaded.

4K 17 4
fabricagen
ablanx

JAX/Flax port of AbLang2's AbRep encoder: differentiable antibody language-model embeddings and per-block attention, loading the original weights unchanged.

139 3 0
isyslab-hust
protflash

ProtFlash: A lightweight protein language model

130 96 3
Dipayan26
protembedder

Extract protein embeddings from FASTA files using ESM-2, ProtT5, and ProtBert models

119 0 0
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