Protein Data Bank Python Packages

hbat

HBAT 2: A Python Package to analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

synth-pdb

Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development

graphein

Protein Graph Library

molecularnodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

mmcif-gen

CLI tool for creating mmCIF files from various facility data sources

mmtfpyspark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

pdb-objects

Object-oriented processing of Protein Databank (PDB) files

pdbminebuilder

PDBj data synchronization and database loading tool