Precision Medicine Python Packages

pytdc

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

gene-normalizer

Services and guidelines for normalizing genes

disease-normalizer

Services and guidelines for normalizing disease terms

thera-py

Services and guidelines for normalizing drug and other therapy terms

sctape

deep learning tools for bulk RNA-seq deconvolution and gene expression analysis

pasmopy

Patient-Specific Modeling in Python

snp-genomic-report

Turn raw consumer DNA data (FTDNA, AncestryDNA, 23andMe, MyHeritage) into a research/educational genomic PDF report. Not medical advice.

mitywgs

A sensitive Mitochondrial variant detection pipeline from WGS data

txgnn

TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design

precisiondoc

Medical Precision Document Processing Tool

txagent

TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools

meganorm

MEGaNorm is a Python package for normative modeling on MEG and EEG data.

pgx-mcp

MCP server for pharmacogenomics — real-time access to ClinVar, PharmGKB, gnomAD, OpenTargets, and clinical trials from Claude