Population Genomics Python Packages

pypop-genomics

PyPop: Python for Population Genomics

sstar

Detecting Archaic Introgression from Population Genetic Data with S*

dadi-cli

A command line interface for dadi

haplodynamics

A python library to develop genomic data simulators

bamrefine

Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog

sai-pg

A Python Package for Statistics for Adaptive Introgression

timesweeper

Python package for detecting positive selective sweeps using time-series genomics sampling data.

graphpop-cli

Graph database-native population genomics CLI with O(V*K) complexity

graphmana

Graph-native data management platform for population genomics

relernn

Recombination Landscape Estimation using Recurrent Neural Networks

project-cli-ab3nzac1yc-hatch

A command line interface for dadi