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Population Genomics Python Packages

Python packages with the GitHub topic population-genomics. Sorted by relevance, with stars and monthly downloads.
alexlancaster
pypop-genomics

PyPop: Python for Population Genomics

16K 26 14
etkayapar
bamrefine

A small program to mask positions that could result in a PMD artifact from a BAM file using a predefined SNP catalog

738 4 1
xin-huang
sstar

A Python package for detecting archaic introgression from population genetic data with S*

617 10 6
remytuyeras
haplodynamics

A python library to develop genomic data simulators

606 4 0
xin-huang
dadi-cli

Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra

449 18 7
SchriderLab
timesweeper

Python package for detecting positive selective sweeps using time-series genomics sampling data.

376 20 2
jfmao
graphmana

Graph-native data management platform for variant genomics

310 3 0
jfmao
graphpop-cli

GraphPop is a population genomics platform that replaces the flat-file, matrix-based paradigm with a graph-native architecture.

305 3 0
kern-lab
relernn

Recombination Landscape Estimation using Recurrent Neural Networks

239 67 14
xin-huang
sai-pg

Statistics for Adaptive Introgression

235 5 5
xin-huang
project-cli-ab3nzac1yc-hatch

Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra

66 18 7
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