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Plink Python Packages

Python packages with the GitHub topic plink. Sorted by relevance, with stars and monthly downloads.
limix
pandas-plink

PLINK reader for Python.

18K 89 23
milescsmith
plinkliftover

Converts genotype data stored in plink's PED+MAP format from one genome build to another, using liftOver

206 5 1
K-nie
genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

198 1 0
krassowski
jupyter-locuszoom

LocusZoom in Jupyter notebooks

137 5 1
Computational-Genomics-BSC
plink-bed-reader

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.

136 2 0
ammodramus
microplink

Fast and minimal PLINK file processing with numba

69 0 0
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