Plink Python Packages

pandas-plink

PLINK reader for Python.

16K 90 24

snputils

Python toolkit for fast genotype I/O, ancestry analysis, population-genetics statistics, genotype QC, GWAS, and visualization

3K 54 4

genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

139 1 0

plinkliftover

Perform liftover on plink files

136 6 2

plink-bed-reader

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.

101 2 0

jupyter-locuszoom

LocusZoom in Jupyter notebooks

75 5 1

microplink

Fast and minimal PLINK file processing with numba

41 0 0