Plink Python Packages

pandas-plink

PLINK reader for Python.

plinkliftover

Converts genotype data stored in plink's PED+MAP format from one genome build to another, using liftOver

genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

jupyter-locuszoom

LocusZoom in Jupyter notebooks

plink-bed-reader

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.

microplink

Fast and minimal PLINK file processing with numba